STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA84956.1PFAM: Protein of unknown function (DUF785). (169 aa)    
Predicted Functional Partners:
AGA86850.1
Hypothetical protein.
 
     0.806
AGA86851.1
PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligase-related protein.
 
     0.805
AGA87853.1
Hypothetical protein.
   
    0.745
AGA88428.1
Small protein A (tmRNA-binding); PFAM: SmpA / OmlA family.
  
    0.595
AGA84955.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; manually curated; Belongs to the DEAD box helicase family.
       0.528
rimK
PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family; Belongs to the RimK family.
 
    0.521
AGA87762.1
PFAM: LppC putative lipoprotein.
  
   
 0.461
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.