Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA84971.1Putative permease, DMT superfamily; PFAM: EamA-like transporter family. (300 aa)    
Predicted Functional Partners:
AGA85620.1
Hypothetical protein.
  
     0.671
AGA85618.1
Hypothetical protein.
  
     0.666
AGA85102.1
HDOD domain-containing protein; PFAM: HDOD domain.
  
     0.646
AGA85619.1
Uncharacterized protein involved in chromosome partitioning.
  
     0.631
AGA84973.1
TRAP-type C4-dicarboxylate transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
     0.615
AGA88307.1
Hypothetical protein.
  
     0.606
AGA85095.1
Putative membrane protein affecting hemolysin expression; PFAM: HAMP domain; Bacterial virulence factor haemolysin.
  
     0.582
AGA88758.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.536
AGA85237.1
PFAM: Uncharacterised protein family (UPF0259).
  
     0.448
AGA84972.1
PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
       0.433
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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