STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA84983.1Hypothetical protein; PFAM: Tripartite tricarboxylate transporter family receptor. (326 aa)    
Predicted Functional Partners:
AGA84981.1
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter TctA family.
  
 0.979
AGA84819.1
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter TctA family.
  
 0.950
AGA84817.1
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter family receptor.
  
  
 
0.929
AGA84818.1
Hypothetical protein.
 
  
 0.897
AGA84982.1
Hypothetical protein.
  
  
 0.882
AGA84820.1
PFAM: Putative ammonia monooxygenase; TIGRFAM: membrane protein AbrB duplication.
 
    0.815
AGA84984.1
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: glucarate dehydratase.
 
    0.751
AGA84816.1
PFAM: outer membrane porin, OprD family.
  
    0.747
AGA84697.1
PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein.
  
     0.495
AGA88397.1
Signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold.
 
    0.487
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.