STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA84992.1Hypothetical protein. (98 aa)    
Predicted Functional Partners:
AGA84994.1
PFAM: Protein of unknown function (DUF3325).
  
    0.977
AGA84993.1
Putative iron-regulated membrane protein; PFAM: PepSY-associated TM helix.
 
    0.968
AGA84991.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor.
 
    0.875
AGA85712.1
Putative heme iron utilization protein; PFAM: Pyridoxamine 5'-phosphate oxidase; Protein of unknown function (DUF2470).
   
    0.672
AGA88807.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
    0.612
AGA88606.1
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.
 
    0.555
AGA87395.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor.
 
    0.534
AGA87572.1
Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
    0.529
AGA88607.1
Putative iron-regulated membrane protein; PFAM: PepSY-associated TM helix.
 
    0.483
AGA85156.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.477
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.