Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA85070.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
AGA85069.1
Lipid A core-O-antigen ligase-like enyme.
  
  
 0.818
AGA85064.1
PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
  
   0.690
AGA85068.1
PFAM: Glycosyltransferase family 25 (LPS biosynthesis protein).
  
  
 0.682
AGA85067.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
  
 0.670
AGA85061.1
Lipopolysaccharide kinase (Kdo/WaaP) family; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
  
 0.650
AGA85062.1
PFAM: Glycosyltransferase family 9 (heptosyltransferase).
  
  
 0.649
AGA86386.1
PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.648
AGA85066.1
Putative carbamoyl transferase, NodU family; PFAM: Carbamoyltransferase.
       0.646
AGA85063.1
PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
  
    0.633
AGA85065.1
Mn2+-dependent serine/threonine protein kinase; PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
       0.602
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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