STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA85076.1Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase. (464 aa)    
Predicted Functional Partners:
AGA85075.1
PFAM: Mig-14.
  
  
 0.945
msbA
Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
     0.880
AGA85094.1
PFAM: Protein of unknown function (DUF330).
  
     0.767
AGA86501.1
PFAM: outer membrane porin, OprD family.
  
     0.765
AGA85654.1
PFAM: outer membrane porin, OprD family.
  
     0.764
AGA85634.1
PFAM: outer membrane porin, OprD family.
  
     0.762
AGA84995.1
PFAM: outer membrane porin, OprD family.
  
   
 0.761
AGA87457.1
Hypothetical protein.
  
     0.757
AGA86257.1
Hypothetical protein.
  
     0.753
AGA84816.1
PFAM: outer membrane porin, OprD family.
  
     0.752
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.