STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA85112.1Putative effector of murein hydrolase; PFAM: LrgB-like family; TIGRFAM: TIGR00659 family protein. (239 aa)    
Predicted Functional Partners:
AGA85111.1
Putative effector of murein hydrolase LrgA; PFAM: LrgA family.
 
  
 0.992
AGA86122.1
Putative effector of murein hydrolase LrgA; PFAM: LrgA family.
 
  
 0.921
AGA85113.1
Peptidase S16, lon domain protein; PFAM: ATP-dependent protease La (LON) domain.
  
    0.856
AGA85110.1
Acyl dehydratase; PFAM: MaoC like domain.
       0.682
AGA85108.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: Semialdehyde dehydrogenase, NAD binding domain.
  
    0.611
AGA85109.1
Hypothetical protein; PFAM: MORN repeat; Peptidase C13 family.
       0.429
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.