Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA85296.1Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: 7TM diverse intracellular signalling; GGDEF domain; 7TMR-DISM extracellular 2; TIGRFAM: diguanylate cyclase (GGDEF) domain. (620 aa)    
Predicted Functional Partners:
AGA85752.1
EAL domain-containing protein; PFAM: EAL domain; GAF domain.
 
    0.816
AGA87996.1
EAL domain-containing protein; PFAM: EAL domain.
 
    0.805
AGA86410.1
PFAM: EAL domain; HAMP domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
 0.781
AGA85098.1
PFAM: EAL domain; Response regulator receiver domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 
 0.745
AGA87210.1
PFAM: HD domain; Response regulator receiver domain.
 
  
 0.675
AGA87229.1
HD-GYP domain-containing protein; PFAM: Domain of unknown function (DUF3391); HD domain.
 
 
 0.628
AGA87711.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: EAL domain; Response regulator receiver domain; GGDEF domain; PAS fold; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
0.604
AGA86185.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain.
 
 
 0.598
AGA85297.1
Uncharacterized radical SAM protein YgiQ; PFAM: Domain of unknown function (DUF3362); Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ.
       0.579
AGA88768.1
PFAM: GGDEF domain; Response regulator receiver domain; Hpt domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
0.535
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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