STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA85400.1TIGRFAM: type IV pilus modification protein PilV; prepilin-type N-terminal cleavage/methylation domain. (189 aa)    
Predicted Functional Partners:
AGA85399.1
TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.989
AGA85401.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.981
AGA85397.1
Hypothetical protein.
 
  
 0.975
AGA85396.1
PFAM: Prokaryotic N-terminal methylation motif; Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.949
AGA87862.1
Tfp pilus assembly protein PilW.
 
  
 0.863
AGA87863.1
Tfp pilus assembly protein PilX.
 
  
 0.833
AGA87864.1
Tfp pilus assembly protein, tip-associated adhesin PilY1; PFAM: Neisseria PilC protein.
 
  
 0.819
AGA85398.1
Hypothetical protein.
     
 0.807
AGA87865.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.779
AGA87860.1
PFAM: Prokaryotic N-terminal methylation motif; Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.771
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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