STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA85417.1Transcriptional regulator. (147 aa)    
Predicted Functional Partners:
AGA85416.1
Transcriptional regulator.
  
0.999
AGA85418.1
Transcriptional regulator, AsnC family.
  
0.999
AGA85414.1
PFAM: Cytochrome D1 heme domain.
 
  
 0.996
AGA85413.1
Hypothetical protein.
 
    0.994
AGA85402.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c; Cytochrome D1 heme domain.
 
  
 0.986
AGA85415.1
Transcriptional regulator.
 
  
0.981
AGA85412.1
PFAM: Cytochrome c.
  
    0.970
AGA85403.1
uroporphyrinogen-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
  
 0.928
AGA85404.1
PFAM: Radical SAM superfamily; TIGRFAM: heme d1 biosynthesis radical SAM protein NirJ; radical SAM additional 4Fe4S-binding domain.
  
 0.928
AGA85408.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c; Cytochrome D1 heme domain.
 
    0.915
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.