STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA85440.1PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily. (475 aa)    
Predicted Functional Partners:
AGA86339.1
PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.691
AGA85083.1
PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family.
  
 
 0.556
AGA85437.1
High-affinity Fe2+/Pb2+ permease; PFAM: Iron permease FTR1 family; TIGRFAM: FTR1 family protein.
 
     0.486
AGA85438.1
Hypothetical protein.
       0.439
AGA85439.1
PFAM: Fe2+ transport protein.
       0.434
AGA85436.1
Hypothetical protein.
  
    0.431
AGA85441.1
Hypothetical protein.
       0.429
AGA86247.1
Gamma-aminobutyrate permease-like transporter; PFAM: Amino acid permease.
  
   
 0.429
AGA84955.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; manually curated; Belongs to the DEAD box helicase family.
       0.420
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.