Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA85563.1PFAM: Protein of unknown function (DUF2845). (98 aa)    
Predicted Functional Partners:
AGA85564.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: Domain of Unknown Function (DUF748).
       0.862
AGA85562.1
PFAM: Protein of unknown function (DUF2845).
  
   
0.848
AGA85565.1
Putative SAM-dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase; Belongs to the methyltransferase superfamily.
       0.726
AGA85566.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2236).
       0.609
AGA84851.1
Hypothetical protein.
  
     0.478
AGA86490.1
PFAM: Protein of unknown function (DUF2835).
  
    0.467
AGA87364.1
Hypothetical protein.
  
     0.457
AGA86216.1
PilZ domain-containing protein; PFAM: PilZ domain.
  
    0.452
AGA86550.1
Hypothetical protein.
  
     0.424
AGA84747.1
PFAM: ImpA-related N-terminal; TIGRFAM: type VI secretion-associated protein, VC_A0119 family.
  
    0.405
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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