STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA85601.1Regulator of competence-specific genes; PFAM: TfoX C-terminal domain. (87 aa)    
Predicted Functional Partners:
AGA85602.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
       0.834
AGA87476.1
Flagellar biosynthesis/type III secretory pathway chaperone; PFAM: FlgN protein.
  
     0.730
AGA85603.1
Hypothetical protein; PFAM: Phosphotransferase enzyme family.
       0.721
cobB
NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family; Belongs to the sirtuin family. Class III subfamily.
    
   0.656
AGA87520.1
NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family.
    
   0.656
AGA85310.1
PFAM: Protein of unknown function (DUF1631).
 
     0.624
AGA85604.1
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
  
    0.623
AGA85600.1
PFAM: Cyclic nucleotide-binding domain.
     
 0.607
AGA88813.1
Hypothetical protein.
  
     0.606
AGA84915.1
Chemotaxis signal transduction protein; PFAM: CheW-like domain.
  
     0.594
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.