Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA85619.1Uncharacterized protein involved in chromosome partitioning. (229 aa)    
Predicted Functional Partners:
AGA85618.1
Hypothetical protein.
 
     0.967
AGA85620.1
Hypothetical protein.
 
    0.948
AGA85102.1
HDOD domain-containing protein; PFAM: HDOD domain.
  
     0.772
AGA88758.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.760
AGA85999.1
PFAM: Curli assembly protein CsgE.
  
     0.744
AGA85095.1
Putative membrane protein affecting hemolysin expression; PFAM: HAMP domain; Bacterial virulence factor haemolysin.
  
     0.742
AGA85710.1
PFAM: Protein of unknown function, DUF481.
  
     0.739
AGA85159.1
PFAM: Bacterial protein of unknown function (Gcw_chp); TIGRFAM: conserved hypothetical protein, proteobacterial.
  
     0.723
AGA85237.1
PFAM: Uncharacterised protein family (UPF0259).
  
     0.723
AGA88354.1
PFAM: Curlin associated repeat.
  
     0.713
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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