Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA85753.1Hypothetical protein; PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein. (150 aa)    
Predicted Functional Partners:
AGA84804.1
Hypothetical protein; PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein.
  
     0.729
AGA86641.1
Topoisomerase IB; PFAM: Eukaryotic DNA topoisomerase I, catalytic core.
 
    0.629
AGA85003.1
PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain.
  
    0.506
AGA85474.1
Hypothetical protein.
  
     0.502
AGA85752.1
EAL domain-containing protein; PFAM: EAL domain; GAF domain.
  
    0.499
AGA85809.1
Putative outer membrane lipoprotein; PFAM: Rickettsia 17 kDa surface antigen.
   
  
 0.492
AGA88782.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.484
AGA85328.1
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
    0.412
AGA86086.1
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
    0.412
AGA87744.1
Bacterioferritin (cytochrome b1); PFAM: Ferritin-like domain.
   
    0.412
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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