STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA85984.1Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase. (525 aa)    
Predicted Functional Partners:
AGA85985.1
Hypothetical protein.
 
     0.945
AGA85983.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit; PFAM: Dehydrogenase E1 component.
       0.707
AGA85980.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: Biotin-requiring enzyme.
 
     0.678
AGA85982.1
Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
  
  
 0.621
AGA87261.1
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region.
 
 
 0.611
AGA86580.1
Hypothetical protein.
  
     0.554
AGA85369.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
    
 0.535
AGA86011.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
    
 0.535
AGA84975.1
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region.
  
 
 0.529
AGA85509.1
Gluconolactonase; PFAM: Major royal jelly protein.
  
 
 0.529
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.