Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA86075.1PFAM: Dicarboxylate transport. (853 aa)    
Predicted Functional Partners:
AGA86073.1
PFAM: Protein of unknown function (DUF1318).
 
   
 0.951
AGA86074.1
Hypothetical protein.
 
   
 0.950
AGA87249.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
     0.713
AGA86666.1
Outer membrane protein; PFAM: Surface antigen variable number repeat; Surface antigen.
 
 
 0.711
AGA86417.1
Putative esterase of the alpha-beta hydrolase superfamily; PFAM: Surface antigen variable number repeat; Patatin-like phospholipase; Surface antigen.
  
 
 0.673
AGA87914.1
Putative membrane protein; PFAM: Uncharacterized protein family, UPF0114.
  
     0.658
AGA85068.1
PFAM: Glycosyltransferase family 25 (LPS biosynthesis protein).
  
     0.640
AGA85792.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
  
     0.617
AGA85371.1
Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; PFAM: Phytanoyl-CoA dioxygenase (PhyH).
  
     0.572
AGA88488.1
Hypothetical protein.
  
     0.498
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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