Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA86163.1Hypothetical protein. (243 aa)    
Predicted Functional Partners:
AGA86164.1
ABC-type uncharacterized transport system involved in gliding motility, auxiliary component; PFAM: ABC-type uncharacterized transport system.
  
 0.996
AGA86162.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
 
  
 0.976
AGA85385.1
Regulator of nitric oxide reductase transcription; PFAM: FMN-binding domain.
  
  
 0.636
AGA86161.1
Beta-lactamase class D; PFAM: Penicillin binding protein transpeptidase domain.
 
     0.512
AGA85390.1
Putative lipoprotein involved in nitrous oxide reduction; PFAM: NosL.
  
  
 0.508
nosZ
Nitrous oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
  
  
 0.503
plsB
PFAM: Acyltransferase; TIGRFAM: glycerol-3-phosphate O-acyltransferase; Belongs to the GPAT/DAPAT family.
       0.502
AGA86165.1
PFAM: 'Cold-shock' DNA-binding domain.
       0.494
AGA85387.1
Parallel beta-helix repeat (two copies); PFAM: Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies).
  
  
 0.406
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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