Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA86299.1PFAM: Protein of unknown function (DUF2802). (137 aa)    
Predicted Functional Partners:
AGA86297.1
PFAM: CheW-like domain.
 
  
 0.942
AGA86298.1
Chemotaxis signal transduction protein; PFAM: CheW-like domain.
 
  
 0.914
AGA86296.1
ATPase involved in chromosome partitioning; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
  
 0.789
AGA88189.1
Type II secretory pathway, component ExeA (predicted ATPase); PFAM: Sporulation related domain.
  
     0.746
AGA88139.1
PFAM: Protein of unknown function (DUF3530).
  
     0.739
AGA87477.1
Putative glycosyltransferase; PFAM: PilZ domain.
  
    0.733
AGA86132.1
PFAM: Protein of unknown function (DUF3087).
  
     0.718
AGA86291.1
Chemotaxis protein; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
    0.715
AGA85237.1
PFAM: Uncharacterised protein family (UPF0259).
  
     0.713
AGA85102.1
HDOD domain-containing protein; PFAM: HDOD domain.
  
     0.690
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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