STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86320.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
AGA86321.1
PFAM: Aminotransferase class I and II.
       0.862
AGA87074.1
Hypothetical protein.
  
     0.765
AGA86200.1
Hypothetical protein.
  
     0.762
AGA85575.1
Hypothetical protein.
  
     0.759
AGA84915.1
Chemotaxis signal transduction protein; PFAM: CheW-like domain.
  
     0.758
AGA88244.1
Hypothetical protein.
  
     0.743
AGA86611.1
Hypothetical protein.
  
     0.737
AGA85099.1
Hypothetical protein.
  
     0.734
AGA85098.1
PFAM: EAL domain; Response regulator receiver domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
  
     0.728
htpX
Heat shock protein; PFAM: Peptidase family M48; Belongs to the peptidase M48B family.
       0.723
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.