Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86352.1PFAM: Chain length determinant protein. (426 aa)    
Predicted Functional Partners:
AGA84860.1
PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.555
AGA88054.1
Hypothetical protein.
  
     0.544
ihfB
Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.529
AGA87306.1
Hypothetical protein.
  
     0.517
AGA85710.1
PFAM: Protein of unknown function, DUF481.
  
     0.504
AGA86903.1
Hypothetical protein.
  
     0.466
AGA85067.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.461
AGA86170.1
PFAM: Phosphate-selective porin O and P.
  
     0.453
AGA86850.1
Hypothetical protein.
  
     0.451
AGA86630.1
PFAM: Domain of unknown function (DUF1883).
  
     0.442
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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