STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86409.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
AGA86407.1
PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
     0.845
AGA86411.1
Putative periplasmic protein; PFAM: Bacterial protein of unknown function (DUF920).
 
     0.765
AGA86410.1
PFAM: EAL domain; HAMP domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
     0.740
AGA86408.1
VCBS repeat-containing protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies); TIGRFAM: type 1 secretion C-terminal target domain (VC_A0849 subclass); VCBS repeat.
 
     0.672
AGA87476.1
Flagellar biosynthesis/type III secretory pathway chaperone; PFAM: FlgN protein.
  
     0.568
AGA85601.1
Regulator of competence-specific genes; PFAM: TfoX C-terminal domain.
  
     0.506
AGA87952.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
     0.411
AGA86216.1
PilZ domain-containing protein; PFAM: PilZ domain.
  
     0.407
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.