STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA86414.1PFAM: Uncharacterised protein family (UPF0149); TIGRFAM: yecA family protein; Belongs to the UPF0149 family. (195 aa)    
Predicted Functional Partners:
AGA86166.1
Hypothetical protein.
  
     0.773
AGA86987.1
Hypothetical protein.
  
     0.723
AGA88790.1
PFAM: Probable metal-binding protein (DUF2387); TIGRFAM: conserved hypothetical metal-binding protein.
  
     0.707
AGA87674.1
Hypothetical protein.
  
     0.665
AGA87217.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
  
     0.640
AGA87338.1
PFAM: Outer membrane protein (OmpH-like).
  
     0.637
AGA86497.1
PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative.
  
     0.625
AGA87728.1
Hypothetical protein.
  
     0.607
AGA86412.1
PFAM: Protein of unknown function (DUF454).
       0.600
AGA85076.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.590
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.