STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86485.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
AGA86482.1
Hypothetical protein.
 
   
 0.967
AGA86483.1
PFAM: Tetratricopeptide repeat.
 
   
 0.957
AGA86486.1
PFAM: Protein of unknown function DUF58.
 
  
 0.951
AGA86484.1
PFAM: von Willebrand factor type A domain.
 
    0.918
AGA86487.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
  
 0.847
AGA86630.1
PFAM: Domain of unknown function (DUF1883).
  
     0.715
AGA86488.1
PFAM: Bacterial NAD-glutamate dehydrogenase.
       0.688
AGA85094.1
PFAM: Protein of unknown function (DUF330).
  
     0.641
AGA85624.1
Hypothetical protein.
 
     0.637
AGA84995.1
PFAM: outer membrane porin, OprD family.
  
     0.584
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.