STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86549.1Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein. (269 aa)    
Predicted Functional Partners:
AGA86550.1
Hypothetical protein.
 
    0.890
AGA86551.1
Putative acyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
    0.866
AGA86552.1
PFAM: Cupin superfamily protein.
       0.862
AGA87094.1
Hypothetical protein.
  
 
 0.861
AGA85899.1
FHA domain-containing protein; PFAM: FHA domain.
 
  
 0.799
AGA86553.1
PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.735
AGA87480.1
PFAM: Arc-like DNA binding domain.
  
     0.710
AGA87364.1
Hypothetical protein.
  
     0.646
hflD
Uncharacterized protein involved in purine metabolism; PFAM: Protein of unknown function (DUF489).
       0.643
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.643
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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