STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86551.1Putative acyltransferase; PFAM: Acetyltransferase (GNAT) family. (141 aa)    
Predicted Functional Partners:
AGA86549.1
Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein.
  
    0.866
AGA86550.1
Hypothetical protein.
       0.862
AGA86552.1
PFAM: Cupin superfamily protein.
       0.862
AGA86553.1
PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.735
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
     0.727
hflD
Uncharacterized protein involved in purine metabolism; PFAM: Protein of unknown function (DUF489).
       0.643
AGA87160.1
Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain.
      0.637
nudJ
ADP-ribose pyrophosphatase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. NudJ subfamily.
       0.591
AGA86557.1
PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type; Belongs to the monomeric-type IDH family.
       0.546
AGA86109.1
PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ.
      
 0.481
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.