STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA86598.1ABC-type uncharacterized transport system, duplicated ATPase component; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily. (553 aa)    
Predicted Functional Partners:
AGA86599.1
ABC-type uncharacterized transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.971
AGA86600.1
ABC-type uncharacterized transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.966
AGA86601.1
ABC-type oligopeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
  
 0.963
AGA86602.1
ABC-type oligopeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
  
 0.959
AGA86597.1
Enoyl-(acyl-carrier-protein) reductase (NADH); PFAM: short chain dehydrogenase.
  
    0.809
AGA86603.1
HDOD domain-containing protein; PFAM: HDOD domain.
       0.588
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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