Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA86650.1PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor. (703 aa)    
Predicted Functional Partners:
AGA88807.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.910
AGA88055.1
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.851
AGA86935.1
Periplasmic protein TonB, links inner and outer membranes; PFAM: Gram-negative bacterial tonB protein.
  
 
 0.822
AGA84993.1
Putative iron-regulated membrane protein; PFAM: PepSY-associated TM helix.
 
  
 0.638
AGA87572.1
Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
  
 0.606
AGA87831.1
Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
   
  
 0.586
AGA88805.1
Putative iron-regulated membrane protein; PFAM: PepSY-associated TM helix.
 
  
 0.582
AGA87838.1
Putative iron-regulated protein; PFAM: 2OG-Fe(II) oxygenase superfamily.
 
    0.574
AGA86055.1
Cell division and transport-associated protein TolA; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TolA protein; TonB family C-terminal domain; TC 2.C.1.2.1.
  
 
 0.551
AGA85845.1
Nicotinamidase-like amidase; PFAM: Isochorismatase family.
   
    0.514
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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