STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86695.1Metal-dependent hydrolase; PFAM: Endonuclease/Exonuclease/phosphatase family. (267 aa)    
Predicted Functional Partners:
AGA86693.1
Putative integral membrane protein; PFAM: Uncharacterised protein family (UPF0104).
 
  
 0.962
clsB
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
 
    0.957
AGA86696.1
PFAM: Protein of unknown function DUF72.
       0.803
AGA86018.1
Selenocysteine lyase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily.
   
   0.632
AGA86248.1
Selenocysteine lyase; PFAM: Aminotransferase class-V.
   
   0.632
AGA85584.1
Putative integral membrane protein; PFAM: Uncharacterised protein family (UPF0104); manually curated.
  
  
 0.526
AGA85736.1
PFAM: Stress-induced bacterial acidophilic repeat motif.
  
    0.509
AGA86704.1
PFAM: 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase.
  
  
 0.497
AGA86763.1
Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
     
 0.489
AGA86703.1
Maltooligosyl trehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: malto-oligosyltrehalose synthase.
 
     0.485
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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