Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA86714.1PFAM: Curlin associated repeat. (354 aa)    
Predicted Functional Partners:
AGA85997.1
Uncharacterized protein involved in formation of curli polymers; PFAM: Curli production assembly/transport component CsgG.
 
  
 0.813
AGA85998.1
PFAM: Curli production assembly/transport component CsgF.
 
  
 0.811
AGA85996.1
PFAM: Curlin associated repeat.
 
   
 0.793
AGA88354.1
PFAM: Curlin associated repeat.
 
   
 0.791
AGA85999.1
PFAM: Curli assembly protein CsgE.
 
  
 0.735
AGA86713.1
ATP-dependent DNA ligase LigD polymerase module; PFAM: ATP dependent DNA ligase domain; Eukaryotic and archaeal DNA primase small subunit; ATP dependent DNA ligase C terminal region; TIGRFAM: DNA polymerase LigD, ligase domain; DNA ligase D; DNA ligase D, 3'-phosphoesterase domain; DNA polymerase LigD, polymerase domain; ATP-dependent DNA ligase LigD phosphoesterase module.
       0.465
AGA86712.1
Hypothetical protein.
       0.412
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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