Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86738.1Hypothetical protein. (503 aa)    
Predicted Functional Partners:
AGA86740.1
PFAM: Zonular occludens toxin (Zot).
  
  
 0.959
AGA86731.1
PFAM: Zonular occludens toxin (Zot).
  
  
 0.830
AGA86739.1
PFAM: Protein of unknown function (DUF2523).
       0.773
AGA88584.1
Hypothetical protein; Manually curated.
   
    0.640
AGA87407.1
Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
  
  
 0.548
AGA87549.1
Site-specific recombinase XerD; PFAM: Phage integrase family.
  
  
 0.548
AGA88593.1
Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
  
  
 0.548
AGA87551.1
PFAM: Zonular occludens toxin (Zot).
  
  
 0.511
AGA88591.1
PFAM: Zonular occludens toxin (Zot).
  
  
 0.511
AGA86741.1
PFAM: DASH complex subunit Dad3.
       0.501
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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