STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86892.1PFAM: MAATS-type transcriptional repressor, C-terminal region; Bacterial regulatory proteins, tetR family. (206 aa)    
Predicted Functional Partners:
AGA85333.1
PFAM: MAATS-type transcriptional repressor, C-terminal region; Bacterial regulatory proteins, tetR family.
  
  
 
0.921
AGA86891.1
PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region.
       0.640
AGA86890.1
PFAM: Glutamine synthetase, catalytic domain; TIGRFAM: glutamine synthetase, type I; glutamine synthetase, type III.
       0.552
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.400
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.