STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA86905.1Putative transcriptional regulator; PFAM: MerR family regulatory protein. (315 aa)    
Predicted Functional Partners:
AGA86919.1
PFAM: FAD binding domain of DNA photolyase; DNA photolyase.
 
  
 0.698
AGA86906.1
PFAM: Protein of unknown function, DUF393.
 
     0.690
AGA86904.1
Pyrroloquinoline quinone synthesis related protease (pqqF); PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); TIGRFAM: coenzyme PQQ biosynthesis probable peptidase PqqF.
       0.664
AGA86913.1
PAS domain S-box; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
 
 
 
 0.611
AGA86917.1
PFAM: Protein of unknown function (DUF523); Protein of unknown function (DUF1722).
  
  
 0.564
AGA87699.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.
 
     0.551
AGA88769.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain; PAS fold; TIGRFAM: PAS domain S-box.
   
 
 0.551
AGA85003.1
PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain.
   
 
 0.534
AGA86920.1
PFAM: SnoaL-like polyketide cyclase.
 
   
 0.528
AGA86923.1
PFAM: Protein of unknown function (DUF1365).
 
   
 0.490
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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