STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86920.1PFAM: SnoaL-like polyketide cyclase. (142 aa)    
Predicted Functional Partners:
AGA86922.1
Putative NAD/FAD-binding protein; PFAM: Flavin containing amine oxidoreductase.
 
   
 0.977
AGA86921.1
Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase.
 
  
 0.976
AGA86923.1
PFAM: Protein of unknown function (DUF1365).
 
   
 0.972
AGA86924.1
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.911
AGA86918.1
Putative transcriptional regulator; PFAM: MerR family regulatory protein.
 
   
 0.902
AGA86917.1
PFAM: Protein of unknown function (DUF523); Protein of unknown function (DUF1722).
  
  
 0.873
AGA86919.1
PFAM: FAD binding domain of DNA photolyase; DNA photolyase.
       0.862
AGA86912.1
Hypothetical protein.
 
     0.805
AGA86910.1
Hypothetical protein.
 
     0.736
AGA86925.1
PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain.
       0.668
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.