STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA86982.1Hypothetical protein. (92 aa)    
Predicted Functional Partners:
selU
tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
       0.805
selD
Selenium donor protein; Synthesizes selenophosphate from selenide and ATP.
       0.805
AGA86985.1
Putative esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin-like phospholipase.
       0.670
AGA85742.1
Putative glycerate kinase; PFAM: MOFRL family.
      
 0.495
AGA86978.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488).
       0.420
AGA86979.1
PFAM: Protein of unknown function DUF58.
       0.420
AGA86980.1
PFAM: ATPase family associated with various cellular activities (AAA).
       0.420
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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