Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA87146.1Hypothetical protein. (53 aa)    
Predicted Functional Partners:
AGA87147.1
DNA-binding domain-containing protein, AraC-type; PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
       0.773
AGA87132.1
Tfp pilus assembly protein PilF.
     
 0.662
AGA87144.1
Flp pilus assembly protein, protease CpaA; PFAM: Type IV leader peptidase family.
       0.504
AGA87145.1
PFAM: Flp/Fap pilin component.
       0.504
AGA87143.1
Hypothetical protein.
       0.494
AGA85260.1
PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
      
 0.485
AGA86751.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme.
      
 0.485
AGA87142.1
PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
       0.485
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.480
AGA86754.1
acyl-CoA synthetase/AMP-acid ligase; PFAM: AMP-binding enzyme.
      
 0.470
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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