Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87155.1PFAM: Protein of unknown function (DUF2489). (153 aa)    
Predicted Functional Partners:
AGA87156.1
Preprotein translocase subunit SecA (ATPase, RNA helicase); PFAM: SEC-C motif.
       0.862
AGA87157.1
Conserved secreted protein; PFAM: Late embryogenesis abundant protein.
       0.862
AGA86212.1
PFAM: Protein of unknown function (DUF539).
  
     0.744
AGA87154.1
PFAM: Penicillin amidase.
       0.731
AGA88790.1
PFAM: Probable metal-binding protein (DUF2387); TIGRFAM: conserved hypothetical metal-binding protein.
  
     0.646
AGA84759.1
PFAM: Acetyltransferase, GNAT family.
  
    0.611
AGA87217.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
  
     0.611
AGA85068.1
PFAM: Glycosyltransferase family 25 (LPS biosynthesis protein).
  
     0.558
AGA86032.1
PFAM: Predicted membrane protein (DUF2069).
  
     0.523
AGA87161.1
PFAM: Bacterial regulatory proteins, tetR family.
 
     0.509
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.