STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA87210.1PFAM: HD domain; Response regulator receiver domain. (380 aa)    
Predicted Functional Partners:
AGA87660.1
PFAM: GGDEF domain; Cyclic nucleotide-binding domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 0.977
AGA87687.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
    0.945
AGA87211.1
PAS domain S-box; PFAM: Cache domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
 
 
 0.883
AGA86640.1
PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
  
 0.867
AGA88762.1
PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 0.842
AGA85360.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: GGDEF domain; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 0.840
AGA86009.1
PFAM: GGDEF domain; MASE2 domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; manually curated.
 
  
 0.836
AGA88768.1
PFAM: GGDEF domain; Response regulator receiver domain; Hpt domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 0.831
AGA86119.1
PFAM: GGDEF domain; GAF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 0.826
AGA85262.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 0.773
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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