STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87271.1Collagenase-like protease; PFAM: Collagenase; Peptidase family U32. (666 aa)    
Predicted Functional Partners:
AGA85429.1
Collagenase-like protease; PFAM: Peptidase family U32.
 
 
 0.800
AGA87979.1
Signal transduction histidine kinase, nitrate/nitrite-specific; PFAM: Histidine kinase; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
    0.695
AGA88795.1
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
   0.657
AGA85430.1
Putative lipid carrier protein; PFAM: SCP-2 sterol transfer family.
 
  
 0.601
AGA87270.1
Hypothetical protein.
       0.549
AGA86426.1
Putative Fe-S oxidoreductase; PFAM: Uncharacterised protein family (UPF0153); manually curated.
  
     0.528
AGA86392.1
Hypothetical protein.
   
    0.516
AGA87272.1
Hypothetical protein.
       0.466
AGA84854.1
Hypothetical protein.
  
   0.444
AGA85428.1
Collagenase-like protease; PFAM: Peptidase family U32.
  
   
0.442
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.