STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87273.1PFAM: Protein of unknown function DUF72. (243 aa)    
Predicted Functional Partners:
AGA88431.1
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
   
    0.637
AGA87602.1
Putative outer membrane protein.
  
    0.560
AGA87274.1
Kef-type K+ ransport system, predicted NAD-binding component; PFAM: Ion channel.
       0.549
AGA86705.1
Maltooligosyl trehalose hydrolase; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; Domain of unknown function (DUF3459); TIGRFAM: malto-oligosyltrehalose trehalohydrolase.
  
    0.535
AGA88655.1
Hypothetical protein.
   
    0.497
AGA88659.1
Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
 
    0.497
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
    0.467
AGA85626.1
Hypothetical protein.
   
    0.460
AGA86641.1
Topoisomerase IB; PFAM: Eukaryotic DNA topoisomerase I, catalytic core.
  
     0.460
AGA87415.1
PFAM: Protein of unknown function, DUF488.
 
     0.447
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.