Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87360.1Penicillin-binding protein, beta-lactamase class C; PFAM: Beta-lactamase. (382 aa)    
Predicted Functional Partners:
dinG
DNA helicase, Rad3; DNA-dependent ATPase and 5'-3' DNA helicase.
 
   
 0.744
AGA87359.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: OmpA family.
     
 0.564
AGA85076.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
 
     0.504
nagZ
Beta-glucosidase-like glycosyl hydrolase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
  
 0.475
ftsI
Cell division protein FtsI/penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
     
 0.467
AGA87362.1
Putative integral membrane protein; PFAM: Copper resistance protein D.
       0.456
AGA85080.1
Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase.
  
     0.444
AGA86494.1
PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family.
 
   
 0.444
AGA87714.1
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily.
  
   
 0.440
AGA85278.1
PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; LysM domain.
     
 0.437
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.