Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA87364.1Hypothetical protein. (165 aa)    
Predicted Functional Partners:
AGA87365.1
Hypothetical protein; PFAM: SEC-C motif; Belongs to the UPF0225 family.
  
    0.869
AGA87480.1
PFAM: Arc-like DNA binding domain.
  
     0.755
AGA86029.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2066).
  
     0.719
AGA87363.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: OmpA family.
       0.716
AGA86106.1
Hypothetical protein.
  
     0.690
AGA85095.1
Putative membrane protein affecting hemolysin expression; PFAM: HAMP domain; Bacterial virulence factor haemolysin.
  
     0.660
AGA86665.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.651
AGA86549.1
Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein.
  
     0.646
AGA87731.1
Hypothetical protein.
  
     0.645
AGA87952.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
     0.642
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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