STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87381.1Hypothetical protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family. (63 aa)    
Predicted Functional Partners:
AGA84806.1
Small integral membrane protein; PFAM: Protein of unknown function (DUF1328).
  
    0.863
AGA86503.1
PFAM: Bacterial protein of unknown function (DUF903).
   
    0.842
AGA87744.1
Bacterioferritin (cytochrome b1); PFAM: Ferritin-like domain.
  
  
 0.805
AGA85561.1
Putative periplasmic or secreted lipoprotein; PFAM: Putative phospholipid-binding domain.
  
    0.793
AGA87765.1
Putative periplasmic or secreted lipoprotein; PFAM: Putative phospholipid-binding domain.
  
    0.793
AGA84688.1
PFAM: Protein of unknown function (DUF1458).
   
    0.753
AGA84947.1
PFAM: Protein of unknown function (DUF3509).
   
    0.731
AGA86376.1
PFAM: Polysaccharide biosynthesis/export protein.
   
    0.670
AGA87383.1
Putative deacetylase; PFAM: Uncharacterized protein conserved in bacteria (DUF2334).
 
     0.666
AGA87382.1
PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
 
     0.645
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.