Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87411.1PFAM: Protein of unknown function (DUF1469). (141 aa)    
Predicted Functional Partners:
AGA87410.1
PFAM: Protein of unknown function (DUF3618).
 
     0.967
AGA87412.1
Hypothetical protein.
 
    0.966
AGA87385.1
Putative membrane protein; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN).
 
     0.558
coq7
Ubiquinone biosynthesis protein COQ7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
    0.495
AGA86703.1
Maltooligosyl trehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: malto-oligosyltrehalose synthase.
 
     0.469
AGA84644.1
PFAM: Bacterial protein of unknown function (DUF883).
  
  
 0.457
AGA86500.1
PFAM: Bacterial protein of unknown function (DUF883).
  
  
 0.457
AGA87570.1
PFAM: Domain of Unknown Function (DUF1206).
  
     0.452
AGA88658.1
Hypothetical protein.
 
    0.449
AGA88151.1
PFAM: Protein of unknown function (DUF444); Belongs to the UPF0229 family.
   
    0.432
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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