Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87439.1Cyanate permease; PFAM: Major Facilitator Superfamily; manually curated. (385 aa)    
Predicted Functional Partners:
AGA87668.1
PFAM: Protein of unknown function (DUF328); Belongs to the UPF0246 family.
  
    0.844
AGA87438.1
Hypothetical protein.
       0.706
AGA87440.1
Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.704
AGA86825.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
     0.515
AGA85782.1
Putative endonuclease containing a URI domain; PFAM: GIY-YIG catalytic domain.
 
     0.486
AGA85931.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
  
   
 0.414
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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