Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87444.1Hypothetical protein. (430 aa)    
Predicted Functional Partners:
AGA87445.1
PFAM: VacJ like lipoprotein.
  
 0.971
AGA86903.1
Hypothetical protein.
 
 
 
 0.740
AGA85094.1
PFAM: Protein of unknown function (DUF330).
  
     0.739
AGA87794.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
   
 0.730
AGA85076.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.729
AGA87446.1
Pirin-related protein; PFAM: Pirin C-terminal cupin domain; Pirin; Belongs to the pirin family.
       0.718
AGA87164.1
Hypothetical protein.
  
     0.657
AGA86105.1
Hypothetical protein.
  
   
 0.649
AGA86257.1
Hypothetical protein.
  
     0.648
AGA87795.1
ABC-type transport system involved in resistance to organic solvents, auxiliary component; PFAM: Toluene tolerance, Ttg2.
 
 
 
 0.636
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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