Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87480.1PFAM: Arc-like DNA binding domain. (105 aa)    
Predicted Functional Partners:
AGA88683.1
Hypothetical protein.
  
     0.762
AGA85095.1
Putative membrane protein affecting hemolysin expression; PFAM: HAMP domain; Bacterial virulence factor haemolysin.
  
     0.758
AGA87364.1
Hypothetical protein.
  
     0.755
AGA87457.1
Hypothetical protein.
  
     0.734
AGA87196.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2059).
  
   
 0.732
AGA85076.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.724
AGA87849.1
Hypothetical protein.
  
     0.723
AGA86076.1
PFAM: Sel1 repeat.
  
     0.712
AGA86257.1
Hypothetical protein.
  
     0.712
AGA86549.1
Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein.
  
     0.710
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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