Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87490.1Hypothetical protein. (406 aa)    
Predicted Functional Partners:
AGA87491.1
PFAM: Uncharacterised protein family (UPF0153); Belongs to the UPF0260 family.
       0.739
AGA87074.1
Hypothetical protein.
  
     0.721
AGA85899.1
FHA domain-containing protein; PFAM: FHA domain.
  
     0.685
AGA88813.1
Hypothetical protein.
  
     0.681
AGA84915.1
Chemotaxis signal transduction protein; PFAM: CheW-like domain.
  
     0.679
AGA88244.1
Hypothetical protein.
  
     0.662
AGA87489.1
Threonine aldolase; PFAM: Beta-eliminating lyase.
       0.646
AGA86614.1
Hypothetical protein.
 
     0.630
AGA87476.1
Flagellar biosynthesis/type III secretory pathway chaperone; PFAM: FlgN protein.
  
     0.612
AGA87731.1
Hypothetical protein.
  
     0.607
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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