Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGA86465.1 | AGA87493.1 | Psest_1920 | Psest_2994 | PFAM: Protein of unknown function (DUF1315). | Hypothetical protein; PFAM: YcgL domain. | 0.495 |
AGA86465.1 | nfuA | Psest_1920 | Psest_2104 | PFAM: Protein of unknown function (DUF1315). | IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.726 |
AGA86465.1 | zipA | Psest_1920 | Psest_2509 | PFAM: Protein of unknown function (DUF1315). | Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. | 0.479 |
AGA87491.1 | AGA87492.1 | Psest_2992 | Psest_2993 | PFAM: Uncharacterised protein family (UPF0153); Belongs to the UPF0260 family. | Hypothetical protein. | 0.512 |
AGA87491.1 | AGA87493.1 | Psest_2992 | Psest_2994 | PFAM: Uncharacterised protein family (UPF0153); Belongs to the UPF0260 family. | Hypothetical protein; PFAM: YcgL domain. | 0.548 |
AGA87491.1 | rnd | Psest_2992 | Psest_2995 | PFAM: Uncharacterised protein family (UPF0153); Belongs to the UPF0260 family. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.559 |
AGA87492.1 | AGA87491.1 | Psest_2993 | Psest_2992 | Hypothetical protein. | PFAM: Uncharacterised protein family (UPF0153); Belongs to the UPF0260 family. | 0.512 |
AGA87492.1 | AGA87493.1 | Psest_2993 | Psest_2994 | Hypothetical protein. | Hypothetical protein; PFAM: YcgL domain. | 0.546 |
AGA87492.1 | rnd | Psest_2993 | Psest_2995 | Hypothetical protein. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.546 |
AGA87493.1 | AGA86465.1 | Psest_2994 | Psest_1920 | Hypothetical protein; PFAM: YcgL domain. | PFAM: Protein of unknown function (DUF1315). | 0.495 |
AGA87493.1 | AGA87491.1 | Psest_2994 | Psest_2992 | Hypothetical protein; PFAM: YcgL domain. | PFAM: Uncharacterised protein family (UPF0153); Belongs to the UPF0260 family. | 0.548 |
AGA87493.1 | AGA87492.1 | Psest_2994 | Psest_2993 | Hypothetical protein; PFAM: YcgL domain. | Hypothetical protein. | 0.546 |
AGA87493.1 | AGA87495.1 | Psest_2994 | Psest_2996 | Hypothetical protein; PFAM: YcgL domain. | Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain. | 0.578 |
AGA87493.1 | cmoM | Psest_2994 | Psest_3358 | Hypothetical protein; PFAM: YcgL domain. | Methyltransferase family protein; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family. | 0.577 |
AGA87493.1 | hflD | Psest_2994 | Psest_2020 | Hypothetical protein; PFAM: YcgL domain. | Uncharacterized protein involved in purine metabolism; PFAM: Protein of unknown function (DUF489). | 0.693 |
AGA87493.1 | nfuA | Psest_2994 | Psest_2104 | Hypothetical protein; PFAM: YcgL domain. | IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.557 |
AGA87493.1 | rnd | Psest_2994 | Psest_2995 | Hypothetical protein; PFAM: YcgL domain. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.905 |
AGA87493.1 | rsmC | Psest_2994 | Psest_3224 | Hypothetical protein; PFAM: YcgL domain. | 16S RNA G1207 methylase RsmC; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family. | 0.501 |
AGA87493.1 | zipA | Psest_2994 | Psest_2509 | Hypothetical protein; PFAM: YcgL domain. | Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. | 0.500 |
AGA87495.1 | AGA87493.1 | Psest_2996 | Psest_2994 | Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain. | Hypothetical protein; PFAM: YcgL domain. | 0.578 |
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