Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87668.1PFAM: Protein of unknown function (DUF328); Belongs to the UPF0246 family. (259 aa)    
Predicted Functional Partners:
AGA87439.1
Cyanate permease; PFAM: Major Facilitator Superfamily; manually curated.
  
    0.844
AGA87667.1
PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter.
       0.592
AGA87666.1
PFAM: PhoH-like protein.
       0.582
AGA85691.1
Hypothetical protein.
       0.420
AGA86599.1
ABC-type uncharacterized transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
   
    0.417
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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